from crystalpol.shared.system.molecule import Molecule from crystalpol.shared.system.crystal import Crystal from crystalpol.shared.system.atom import Atom from crystalpol.shared.config import Config from crystalpol.shared.utils.log import Log from io import StringIO import logging from unittest import TestCase, mock class TestLog(TestCase): def setUp(self): self.log_stream = StringIO() logging.basicConfig( stream=self.log_stream, format='%(message)s', level=logging.INFO ) self.logger = logging.getLogger() def tearDown(self): logging.getLogger().removeHandler( logging.getLogger().handlers[0] ) del self.logger del self.log_stream @mock.patch('crystalpol.shared.utils.log.sys') @mock.patch('crystalpol.shared.utils.log.weekday_date_time') def test_make_header(self, weekday_date_time_mock, sys_mock): weekday_date_time_mock.return_value = 'Test Day' sys_mock.version = 'Test Version' config = Config( mem=1, level="b3lyp/aug-cc-pVDZ", n_atoms=10 ) Log.make_header('test', config.to_dict(), logger=self.logger) expected_log_stream = [ '##########################################################################################\n', '############## Welcome to CRYSTALPOL version test ##############\n', '##########################################################################################\n', '\n', 'Your python version is Test Version\n', '\n', 'Program started on Test Day\n', '\n', '------------------------------------------------------------------------------------------\n', ' CRYSTALPOL variables being used in this run: \n', '------------------------------------------------------------------------------------------\n', '\n', '\tmem = 1\n', '\tlevel = b3lyp/aug-cc-pVDZ\n', '\tn_atoms = 10\n', '\tn_procs = 1\n', '\tpop = chelpg\n', '\tcomment = crystalpol\n', '\tcharge_tolerance = 0.02\n', '\tsimulation_dir = simfiles\n', '\tmult = [0, 1]\n', '------------------------------------------------------------------------------------------\n', ' RUN Results: \n', '------------------------------------------------------------------------------------------\n', '\n' ] self.log_stream.seek(0) self.assertEqual(self.log_stream.readlines(), expected_log_stream) def test_make_run(self): Log.make_run(1, 0.000000, [], self.create_crystal(), logger=self.logger) expected_log_stream = [ 'cycle: 1\n', '\n', 'Max charge diff: 0.00000\n', 'Charge Diff: []\n', '\n', '------------------------------------------------------------------------------------------\n', ' S rx ry rz chg \n', '------------------------------------------------------------------------------------------\n', ' H 0.000000 0.000000 0.000000 0.000000 \n', '\n', '------------------------------------------------------------------------------------------\n', '\n' ] self.log_stream.seek(0) self.assertEqual(self.log_stream.readlines(), expected_log_stream) @staticmethod def create_crystal(): crystal_structure = [ ['H '] ] crystal = Crystal(crystal_structure) molecule = Molecule("TESTE") molecule.add_atom( Atom( na=1, rx=0.000000, ry=0.000000, rz=0.000000, chg=0.000000 ) ) crystal.add_cell([molecule]) crystal.add_cell([molecule]) return crystal