Implements Refactoring in Player Class and Initial Working Version
This commit is contained in:
111
tests/mocks/mock_inputs.py
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111
tests/mocks/mock_inputs.py
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@@ -0,0 +1,111 @@
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from unittest import mock
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def get_config_example():
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return """
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diceplayer:
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opt: no
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mem: 12
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maxcyc: 3
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ncores: 4
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nprocs: 4
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qmprog: 'g16'
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lps: no
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ghosts: no
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altsteps: 20000
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dice:
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nmol: [1, 50]
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dens: 0.75
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nstep: [2000, 3000, 4000]
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isave: 1000
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outname: 'phb'
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progname: '~/.local/bin/dice'
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ljname: 'phb.ljc'
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randominit: 'first'
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gaussian:
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qmprog: 'g16'
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level: 'MP2/aug-cc-pVDZ'
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keywords: 'freq'
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"""
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def get_potentials_exemple():
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return """\
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*
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2
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1 TEST
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1 1 0.000000 0.000000 0.000000 0.000000 0.0000 0.0000
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1 PLACEHOLDER
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1 1 0.000000 0.000000 0.000000 0.000000 0.0000 0.0000
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"""
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def get_potentials_error_combrule():
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return """\
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.
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2
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1 TEST
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1 1 0.000000 0.000000 0.000000 0.000000 0.0000 0.0000
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1 PLACEHOLDER
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1 1 0.000000 0.000000 0.000000 0.000000 0.0000 0.0000
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"""
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def get_potentials_error_ntypes():
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return """\
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*
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a
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1 TEST
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1 1 0.000000 0.000000 0.000000 0.000000 0.0000 0.0000
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1 PLACEHOLDER
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1 1 0.000000 0.000000 0.000000 0.000000 0.0000 0.0000
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"""
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def get_potentials_error_ntypes_config():
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return """\
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*
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3
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1 TEST
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1 1 0.000000 0.000000 0.000000 0.000000 0.0000 0.0000
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1 PLACEHOLDER
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1 1 0.000000 0.000000 0.000000 0.000000 0.0000 0.0000
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"""
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def get_potentials_error_nsites():
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return """\
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*
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2
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. TEST
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1 1 0.000000 0.000000 0.000000 0.000000 0.0000 0.0000
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1 PLACEHOLDER
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1 1 0.000000 0.000000 0.000000 0.000000 0.0000 0.0000
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"""
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def get_potentials_error_molname():
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return """\
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*
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2
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1
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1 1 0.000000 0.000000 0.000000 0.000000 0.0000 0.0000
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1 PLACEHOLDER
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1 1 0.000000 0.000000 0.000000 0.000000 0.0000 0.0000
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"""
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def mock_open(file, *args, **kwargs):
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values = {
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"control.test.yml": get_config_example(),
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"phb.ljc": get_potentials_exemple(),
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"phb.error.combrule.ljc": get_potentials_error_combrule(),
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"phb.error.ntypes.ljc": get_potentials_error_ntypes(),
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"phb.error.ntypes.config.ljc": get_potentials_error_ntypes_config(),
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"phb.error.nsites.ljc": get_potentials_error_nsites(),
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"phb.error.molname.ljc": get_potentials_error_molname(),
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}
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mock_file = mock.mock_open(read_data=values[file])
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return mock_file()
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@@ -1,11 +1,11 @@
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from diceplayer.shared.config.dice_dto import DiceDTO
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from diceplayer.shared.config.dice_config import DiceConfig
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import unittest
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class TestDiceDto(unittest.TestCase):
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def test_class_instantiation(self):
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dice_dto = DiceDTO(
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dice_dto = DiceConfig(
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ljname='test',
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outname='test',
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dens=1.0,
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@@ -13,11 +13,11 @@ class TestDiceDto(unittest.TestCase):
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nstep=[1, 1],
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)
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self.assertIsInstance(dice_dto, DiceDTO)
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self.assertIsInstance(dice_dto, DiceConfig)
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def test_validate_jname(self):
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with self.assertRaises(ValueError) as ex:
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DiceDTO(
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DiceConfig(
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ljname=None,
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outname='test',
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dens=1.0,
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@@ -28,7 +28,7 @@ class TestDiceDto(unittest.TestCase):
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def test_validate_outname(self):
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with self.assertRaises(ValueError) as ex:
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DiceDTO(
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DiceConfig(
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ljname='test',
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outname=None,
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dens=1.0,
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@@ -39,7 +39,7 @@ class TestDiceDto(unittest.TestCase):
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def test_validate_dens(self):
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with self.assertRaises(ValueError) as ex:
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DiceDTO(
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DiceConfig(
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ljname='test',
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outname='test',
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dens=None,
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@@ -50,7 +50,7 @@ class TestDiceDto(unittest.TestCase):
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def test_validate_nmol(self):
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with self.assertRaises(ValueError) as ex:
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DiceDTO(
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DiceConfig(
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ljname='test',
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outname='test',
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dens=1.0,
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@@ -61,7 +61,7 @@ class TestDiceDto(unittest.TestCase):
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def test_validate_nstep(self):
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with self.assertRaises(ValueError) as ex:
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DiceDTO(
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DiceConfig(
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ljname='test',
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outname='test',
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dens=1.0,
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@@ -71,7 +71,7 @@ class TestDiceDto(unittest.TestCase):
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self.assertEqual(ex.exception, "Error: 'nstep' keyword not defined appropriately in config file")
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def test_from_dict(self):
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dice_dto = DiceDTO.from_dict({
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dice_dto = DiceConfig.from_dict({
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'ljname': 'test',
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'outname': 'test',
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'dens': 1.0,
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@@ -79,4 +79,4 @@ class TestDiceDto(unittest.TestCase):
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'nstep': [1, 1],
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})
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self.assertIsInstance(dice_dto, DiceDTO)
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self.assertIsInstance(dice_dto, DiceConfig)
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@@ -1,4 +1,4 @@
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from diceplayer.shared.config.gaussian_dto import GaussianDTO
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from diceplayer.shared.config.gaussian_config import GaussianDTO
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import unittest
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@@ -1,28 +1,84 @@
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from diceplayer.shared.config.player_dto import PlayerDTO
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from diceplayer.shared.config.gaussian_config import GaussianDTO
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from diceplayer.shared.config.player_config import PlayerConfig
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from diceplayer.shared.config.dice_config import DiceConfig
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import unittest
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class TestPlayerDTO(unittest.TestCase):
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def test_class_instantiation(self):
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player_dto = PlayerDTO(opt=True, maxcyc=100, nprocs=4, ncores=4)
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def get_config_dict():
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return {
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'opt': True,
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'mem': 12,
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'maxcyc': 100,
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'nprocs': 4,
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'ncores': 4,
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'dice': {
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'ljname': 'test',
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'outname': 'test',
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'dens': 1.0,
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'nmol': [1],
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'nstep': [1, 1],
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},
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'gaussian': {
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'level': 'test',
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'qmprog': 'g16',
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'keywords': 'test',
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}
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}
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self.assertIsInstance(player_dto, PlayerDTO)
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class TestPlayerDTO(unittest.TestCase):
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def setUp(self) -> None:
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self.dice_dto = DiceConfig(
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ljname='test',
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outname='test',
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dens=1.0,
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nmol=[1],
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nstep=[1, 1],
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)
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self.gaussian_dto = GaussianDTO(
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level='test',
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qmprog='g16',
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keywords='test',
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)
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def test_class_instantiation(self):
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player_dto = PlayerConfig(
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opt=True,
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mem=12,
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maxcyc=100,
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nprocs=4,
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ncores=4,
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dice=self.dice_dto,
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gaussian=self.gaussian_dto
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)
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self.assertIsInstance(player_dto, PlayerConfig)
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self.assertIsInstance(player_dto.dice, DiceConfig)
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self.assertIsInstance(player_dto.gaussian, GaussianDTO)
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def test_min_altsteps(self):
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player_dto = PlayerDTO(opt=True, maxcyc=100, nprocs=4, ncores=4, altsteps=100)
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player_dto = PlayerConfig(
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opt=True,
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mem=12,
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maxcyc=100,
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nprocs=4,
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ncores=4,
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altsteps=100,
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dice=self.dice_dto,
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gaussian=self.gaussian_dto
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)
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self.assertEqual(player_dto.altsteps, 20000)
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def test_from_dict(self):
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player_dto = PlayerDTO.from_dict({
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'opt': True,
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'maxcyc': 100,
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'nprocs': 4,
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'ncores': 4,
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})
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player_dto = PlayerConfig.from_dict(
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get_config_dict()
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)
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self.assertIsInstance(player_dto, PlayerDTO)
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self.assertIsInstance(player_dto, PlayerConfig)
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self.assertIsInstance(player_dto.dice, DiceConfig)
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self.assertIsInstance(player_dto.gaussian, GaussianDTO)
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if __name__ == '__main__':
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@@ -13,18 +13,14 @@ class TestSystem(unittest.TestCase):
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def test_add_type(self):
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system = System()
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system.add_type(0, Molecule('test'))
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system.add_type(Molecule('test'))
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self.assertIsInstance(system.molecule, list)
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self.assertIsInstance(system.nmols, list)
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with self.assertRaises(TypeError) as ex:
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system.add_type(0, 'test')
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system.add_type('test')
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self.assertEqual(ex.exception, 'Error: molecule is not a Molecule instance')
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with self.assertRaises(TypeError) as ex:
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system.add_type('test', Molecule('test'))
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self.assertEqual(ex.exception, 'Error: nmols is not an integer')
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if __name__ == '__main__':
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@@ -1,11 +1,14 @@
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from diceplayer.shared.interface.dice_interface import DiceInterface
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from diceplayer.shared.config.player_config import PlayerConfig
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from diceplayer.shared.environment.molecule import Molecule
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from diceplayer.shared.environment.system import System
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from diceplayer.shared.environment.atom import Atom
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from diceplayer.shared.config.step_dto import StepDTO
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from diceplayer import logger
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import yaml
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import io
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from tests.mocks.mock_inputs import get_config_example
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from tests.mocks.mock_proc import MockConnection, MockProc
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from unittest import mock
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@@ -16,122 +19,58 @@ class TestDiceInterface(unittest.TestCase):
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def setUp(self):
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logger.set_logger(stream=io.StringIO())
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config = yaml.load(get_config_example(), Loader=yaml.Loader)
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self.config = PlayerConfig.from_dict(config['diceplayer'])
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def test_class_instantiation(self):
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dice = DiceInterface(
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{
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'ljname': 'test',
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'outname': 'test',
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'ncores': 1,
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'dens': 1.0,
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'nmol': [1],
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'nstep': [1, 1],
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}
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)
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dice = DiceInterface()
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self.assertIsInstance(dice, DiceInterface)
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def test_configure(self):
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dice = DiceInterface(
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{
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'ljname': 'test',
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'outname': 'test',
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'ncores': 1,
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'dens': 1.0,
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'nmol': [1],
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'nstep': [1, 1],
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}
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)
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dice = DiceInterface()
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self.assertIsNone(dice.step)
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self.assertIsNone(dice.system)
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dice.configure('test')
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# Ignoring the types for testing purposes
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dice.configure(self.config, System())
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self.assertIsNotNone(dice.step)
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self.assertIsNotNone(dice.system)
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def test_reset(self):
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dice = DiceInterface(
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{
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'ljname': 'test',
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'outname': 'test',
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'ncores': 1,
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'dens': 1.0,
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'nmol': [1],
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'nstep': [1, 1],
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}
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)
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dice = DiceInterface()
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dice.configure('test')
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dice.configure(self.config, System())
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self.assertTrue(hasattr(dice, 'step'))
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self.assertTrue(hasattr(dice, 'system'))
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dice.reset()
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self.assertFalse(hasattr(dice, 'step'))
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self.assertFalse(hasattr(dice, 'system'))
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@mock.patch('diceplayer.shared.interface.dice_interface.Process', MockProc())
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@mock.patch('diceplayer.shared.interface.dice_interface.connection', MockConnection)
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def test_start(self):
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dice = DiceInterface(
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{
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'ljname': 'test',
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'outname': 'test',
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'ncores': 1,
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'dens': 1.0,
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'nmol': [1],
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'nstep': [1, 1],
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}
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)
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dice.configure(
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StepDTO(
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ncores=1,
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nprocs=1,
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simulation_dir='test',
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altsteps=1,
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molecule=[],
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nmol=[],
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)
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)
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dice = DiceInterface()
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dice.configure(self.config, System())
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dice.start(1)
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@mock.patch('diceplayer.shared.interface.dice_interface.connection', MockConnection)
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@mock.patch('diceplayer.shared.interface.dice_interface.Process', MockProc(exitcode=1))
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def test_start_with_process_error(self):
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dice = DiceInterface(
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{
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'ljname': 'test',
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'outname': 'test',
|
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'ncores': 1,
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'dens': 1.0,
|
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'nmol': [1],
|
||||
'nstep': [1, 1],
|
||||
}
|
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)
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dice.configure(
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StepDTO(
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ncores=1,
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nprocs=2,
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simulation_dir='test',
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altsteps=1,
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molecule=[],
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nmol=[],
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)
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||||
)
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dice = DiceInterface()
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dice.configure(self.config, System())
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with self.assertRaises(SystemExit):
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dice.start(1)
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def test_simulation_process_raises_exception(self):
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dice = DiceInterface(
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{
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'ljname': 'test',
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'outname': 'test',
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'ncores': 1,
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'dens': 1.0,
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'nmol': [1],
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'nstep': [1, 1],
|
||||
}
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)
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dice = DiceInterface()
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with self.assertRaises(SystemExit):
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dice._simulation_process(1, 1)
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@@ -140,16 +79,7 @@ class TestDiceInterface(unittest.TestCase):
|
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@mock.patch('diceplayer.shared.interface.dice_interface.DiceInterface._make_dice_inputs')
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@mock.patch('diceplayer.shared.interface.dice_interface.DiceInterface._run_dice')
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def test_simulation_process(self, mock_run_dice, mock_make_dice_inputs, mock_make_proc_dir):
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dice = DiceInterface(
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{
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'ljname': 'test',
|
||||
'outname': 'test',
|
||||
'ncores': 1,
|
||||
'dens': 1.0,
|
||||
'nmol': [1],
|
||||
'nstep': [1, 1],
|
||||
}
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||||
)
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||||
dice = DiceInterface()
|
||||
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dice._simulation_process(1, 1)
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||||
@@ -160,26 +90,8 @@ class TestDiceInterface(unittest.TestCase):
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||||
@mock.patch('diceplayer.shared.interface.dice_interface.Path.mkdir')
|
||||
@mock.patch('diceplayer.shared.interface.dice_interface.Path.exists')
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||||
def test_make_proc_dir_if_simdir_exists(self, mock_path_exists, mock_path_mkdir):
|
||||
dice = DiceInterface(
|
||||
{
|
||||
'ljname': 'test',
|
||||
'outname': 'test',
|
||||
'ncores': 1,
|
||||
'dens': 1.0,
|
||||
'nmol': [1],
|
||||
'nstep': [1, 1],
|
||||
}
|
||||
)
|
||||
dice.configure(
|
||||
StepDTO(
|
||||
ncores=1,
|
||||
nprocs=1,
|
||||
simulation_dir='test',
|
||||
altsteps=1,
|
||||
molecule=[],
|
||||
nmol=[],
|
||||
)
|
||||
)
|
||||
dice = DiceInterface()
|
||||
dice.configure(self.config, System())
|
||||
|
||||
mock_path_exists.return_value = False
|
||||
|
||||
@@ -190,26 +102,8 @@ class TestDiceInterface(unittest.TestCase):
|
||||
@mock.patch('diceplayer.shared.interface.dice_interface.Path.mkdir')
|
||||
@mock.patch('diceplayer.shared.interface.dice_interface.Path.exists')
|
||||
def test_make_proc_dir_if_simdir_doesnt_exists(self, mock_path_exists, mock_path_mkdir):
|
||||
dice = DiceInterface(
|
||||
{
|
||||
'ljname': 'test',
|
||||
'outname': 'test',
|
||||
'ncores': 1,
|
||||
'dens': 1.0,
|
||||
'nmol': [1],
|
||||
'nstep': [1, 1],
|
||||
}
|
||||
)
|
||||
dice.configure(
|
||||
StepDTO(
|
||||
ncores=1,
|
||||
nprocs=1,
|
||||
simulation_dir='test',
|
||||
altsteps=1,
|
||||
molecule=[],
|
||||
nmol=[],
|
||||
)
|
||||
)
|
||||
dice = DiceInterface()
|
||||
dice.configure(self.config, System())
|
||||
|
||||
mock_path_exists.return_value = False
|
||||
|
||||
@@ -218,42 +112,15 @@ class TestDiceInterface(unittest.TestCase):
|
||||
self.assertEqual(mock_path_mkdir.call_count, 2)
|
||||
|
||||
def test_make_dice_seed(self):
|
||||
dice = DiceInterface(
|
||||
{
|
||||
'ljname': 'test',
|
||||
'outname': 'test',
|
||||
'ncores': 1,
|
||||
'dens': 1.0,
|
||||
'nmol': [1],
|
||||
'nstep': [1, 1],
|
||||
}
|
||||
)
|
||||
|
||||
seed = dice._make_dice_seed()
|
||||
seed = DiceInterface._make_dice_seed()
|
||||
|
||||
self.assertIsInstance(seed, int)
|
||||
|
||||
def test_make_dice_inputs_nstep_len_two_with_randoninit_first_cycle_one(self):
|
||||
dice = DiceInterface(
|
||||
{
|
||||
'ljname': 'test',
|
||||
'outname': 'test',
|
||||
'ncores': 1,
|
||||
'dens': 1.0,
|
||||
'nmol': [1],
|
||||
'nstep': [1, 1],
|
||||
}
|
||||
)
|
||||
dice.configure(
|
||||
StepDTO(
|
||||
ncores=1,
|
||||
nprocs=1,
|
||||
simulation_dir='test',
|
||||
altsteps=1,
|
||||
molecule=[],
|
||||
nmol=[],
|
||||
)
|
||||
)
|
||||
dice = DiceInterface()
|
||||
dice.configure(self.config, System())
|
||||
|
||||
dice.step.dice.nstep = [1, 1]
|
||||
|
||||
dice._make_potentials = mock.Mock()
|
||||
|
||||
@@ -281,26 +148,10 @@ class TestDiceInterface(unittest.TestCase):
|
||||
@mock.patch('builtins.open', new_callable=mock.mock_open, read_data='test')
|
||||
@mock.patch('diceplayer.shared.interface.dice_interface.Path.exists', return_value=True)
|
||||
def test_make_dice_inputs_nstep_len_two_with_randoninit_first_cycle_two(self, mock_path_exists, mock_open):
|
||||
dice = DiceInterface(
|
||||
{
|
||||
'ljname': 'test',
|
||||
'outname': 'test',
|
||||
'ncores': 1,
|
||||
'dens': 1.0,
|
||||
'nmol': [1],
|
||||
'nstep': [1, 1],
|
||||
}
|
||||
)
|
||||
dice.configure(
|
||||
StepDTO(
|
||||
ncores=1,
|
||||
nprocs=1,
|
||||
simulation_dir='test',
|
||||
altsteps=1,
|
||||
molecule=[],
|
||||
nmol=[],
|
||||
)
|
||||
)
|
||||
dice = DiceInterface()
|
||||
dice.configure(self.config, System())
|
||||
|
||||
dice.step.dice.nstep = [1, 1]
|
||||
|
||||
dice._make_potentials = mock.Mock()
|
||||
|
||||
@@ -327,26 +178,10 @@ class TestDiceInterface(unittest.TestCase):
|
||||
|
||||
@mock.patch('diceplayer.shared.interface.dice_interface.Path.exists', return_value=False)
|
||||
def test_make_dice_inputs_raises_exception_on_last_not_found(self, mock_path_exists):
|
||||
dice = DiceInterface(
|
||||
{
|
||||
'ljname': 'test',
|
||||
'outname': 'test',
|
||||
'ncores': 1,
|
||||
'dens': 1.0,
|
||||
'nmol': [1],
|
||||
'nstep': [1, 1],
|
||||
}
|
||||
)
|
||||
dice.configure(
|
||||
StepDTO(
|
||||
ncores=1,
|
||||
nprocs=1,
|
||||
simulation_dir='test',
|
||||
altsteps=1,
|
||||
molecule=[],
|
||||
nmol=[],
|
||||
)
|
||||
)
|
||||
dice = DiceInterface()
|
||||
dice.configure(self.config, System())
|
||||
|
||||
dice.step.dice.nstep = [1, 1]
|
||||
|
||||
dice._make_potentials = mock.Mock()
|
||||
|
||||
@@ -362,26 +197,8 @@ class TestDiceInterface(unittest.TestCase):
|
||||
dice._make_dice_inputs(2, 1)
|
||||
|
||||
def test_make_dice_inputs_nstep_len_three_with_randoninit_first_cycle_one(self):
|
||||
dice = DiceInterface(
|
||||
{
|
||||
'ljname': 'test',
|
||||
'outname': 'test',
|
||||
'ncores': 1,
|
||||
'dens': 1.0,
|
||||
'nmol': [1],
|
||||
'nstep': [1, 1, 1],
|
||||
}
|
||||
)
|
||||
dice.configure(
|
||||
StepDTO(
|
||||
ncores=1,
|
||||
nprocs=1,
|
||||
simulation_dir='test',
|
||||
altsteps=1,
|
||||
molecule=[],
|
||||
nmol=[],
|
||||
)
|
||||
)
|
||||
dice = DiceInterface()
|
||||
dice.configure(self.config, System())
|
||||
|
||||
dice._make_potentials = mock.Mock()
|
||||
|
||||
@@ -410,26 +227,10 @@ class TestDiceInterface(unittest.TestCase):
|
||||
@mock.patch('diceplayer.shared.interface.dice_interface.shutil')
|
||||
@mock.patch('diceplayer.shared.interface.dice_interface.Path.exists', return_value=True)
|
||||
def test_run_dice_on_first_cycle_run_successful(self, mock_path_exists, mock_shutils, mock_os):
|
||||
dice = DiceInterface(
|
||||
{
|
||||
'ljname': 'test',
|
||||
'outname': 'test',
|
||||
'ncores': 1,
|
||||
'dens': 1.0,
|
||||
'nmol': [1],
|
||||
'nstep': [1, 1, 1],
|
||||
}
|
||||
)
|
||||
dice.configure(
|
||||
StepDTO(
|
||||
ncores=1,
|
||||
nprocs=1,
|
||||
simulation_dir='test',
|
||||
altsteps=1,
|
||||
molecule=[],
|
||||
nmol=[],
|
||||
)
|
||||
)
|
||||
dice = DiceInterface()
|
||||
dice.configure(self.config, System())
|
||||
|
||||
dice.step.dice.nstep = [1, 1, 1]
|
||||
|
||||
dice.run_dice_file = mock.Mock()
|
||||
|
||||
@@ -441,26 +242,10 @@ class TestDiceInterface(unittest.TestCase):
|
||||
self.assertEqual(dice.run_dice_file.call_count, 3)
|
||||
self.assertTrue(mock_shutils.copy.called)
|
||||
|
||||
dice = DiceInterface(
|
||||
{
|
||||
'ljname': 'test',
|
||||
'outname': 'test',
|
||||
'ncores': 1,
|
||||
'dens': 1.0,
|
||||
'nmol': [1],
|
||||
'nstep': [1, 1],
|
||||
}
|
||||
)
|
||||
dice.configure(
|
||||
StepDTO(
|
||||
ncores=1,
|
||||
nprocs=1,
|
||||
simulation_dir='test',
|
||||
altsteps=1,
|
||||
molecule=[],
|
||||
nmol=[],
|
||||
)
|
||||
)
|
||||
dice = DiceInterface()
|
||||
dice.configure(self.config, System())
|
||||
|
||||
dice.step.dice.nstep = [1, 1]
|
||||
|
||||
dice.run_dice_file = mock.Mock()
|
||||
|
||||
@@ -476,26 +261,8 @@ class TestDiceInterface(unittest.TestCase):
|
||||
@mock.patch('diceplayer.shared.interface.dice_interface.shutil')
|
||||
@mock.patch('diceplayer.shared.interface.dice_interface.Path.exists', return_value=True)
|
||||
def test_run_dice_on_second_cycle_run_successful(self, mock_path_exists, mock_shutils, mock_os):
|
||||
dice = DiceInterface(
|
||||
{
|
||||
'ljname': 'test',
|
||||
'outname': 'test',
|
||||
'ncores': 1,
|
||||
'dens': 1.0,
|
||||
'nmol': [1],
|
||||
'nstep': [1, 1, 1],
|
||||
}
|
||||
)
|
||||
dice.configure(
|
||||
StepDTO(
|
||||
ncores=1,
|
||||
nprocs=1,
|
||||
simulation_dir='test',
|
||||
altsteps=1,
|
||||
molecule=[],
|
||||
nmol=[],
|
||||
)
|
||||
)
|
||||
dice = DiceInterface()
|
||||
dice.configure(self.config, System())
|
||||
|
||||
dice.run_dice_file = mock.Mock()
|
||||
|
||||
@@ -507,26 +274,8 @@ class TestDiceInterface(unittest.TestCase):
|
||||
self.assertEqual(dice.run_dice_file.call_count, 2)
|
||||
self.assertTrue(mock_shutils.copy.called)
|
||||
|
||||
dice = DiceInterface(
|
||||
{
|
||||
'ljname': 'test',
|
||||
'outname': 'test',
|
||||
'ncores': 1,
|
||||
'dens': 1.0,
|
||||
'nmol': [1],
|
||||
'nstep': [1, 1],
|
||||
}
|
||||
)
|
||||
dice.configure(
|
||||
StepDTO(
|
||||
ncores=1,
|
||||
nprocs=1,
|
||||
simulation_dir='test',
|
||||
altsteps=1,
|
||||
molecule=[],
|
||||
nmol=[],
|
||||
)
|
||||
)
|
||||
dice = DiceInterface()
|
||||
dice.configure(self.config, System())
|
||||
|
||||
dice.run_dice_file = mock.Mock()
|
||||
|
||||
@@ -542,26 +291,8 @@ class TestDiceInterface(unittest.TestCase):
|
||||
@mock.patch('diceplayer.shared.interface.dice_interface.shutil')
|
||||
@mock.patch('diceplayer.shared.interface.dice_interface.Path.exists', return_value=False)
|
||||
def test_run_dice_on_second_cycle_run_successful(self, mock_path_exists, mock_shutils, mock_os):
|
||||
dice = DiceInterface(
|
||||
{
|
||||
'ljname': 'test',
|
||||
'outname': 'test',
|
||||
'ncores': 1,
|
||||
'dens': 1.0,
|
||||
'nmol': [1],
|
||||
'nstep': [1, 1],
|
||||
}
|
||||
)
|
||||
dice.configure(
|
||||
StepDTO(
|
||||
ncores=1,
|
||||
nprocs=1,
|
||||
simulation_dir='test',
|
||||
altsteps=1,
|
||||
molecule=[],
|
||||
nmol=[],
|
||||
)
|
||||
)
|
||||
dice = DiceInterface()
|
||||
dice.configure(self.config, System())
|
||||
|
||||
dice.run_dice_file = mock.Mock()
|
||||
|
||||
@@ -587,32 +318,14 @@ class TestDiceInterface(unittest.TestCase):
|
||||
secondary_molecule = Molecule('secondary_molecule')
|
||||
secondary_molecule.add_atom(example_atom)
|
||||
|
||||
dice = DiceInterface(
|
||||
{
|
||||
'ljname': 'test',
|
||||
'outname': 'test',
|
||||
'ncores': 1,
|
||||
'dens': 1.0,
|
||||
'nmol': [1],
|
||||
'nstep': [1, 1],
|
||||
}
|
||||
)
|
||||
dice.configure(
|
||||
StepDTO(
|
||||
ncores=1,
|
||||
nprocs=1,
|
||||
simulation_dir='test',
|
||||
altsteps=1,
|
||||
molecule=[
|
||||
main_molecule,
|
||||
secondary_molecule,
|
||||
],
|
||||
nmol=[
|
||||
len(main_molecule.atom),
|
||||
len(secondary_molecule.atom),
|
||||
],
|
||||
)
|
||||
)
|
||||
system = System()
|
||||
system.add_type(main_molecule)
|
||||
system.add_type(secondary_molecule)
|
||||
|
||||
dice = DiceInterface()
|
||||
dice.configure(self.config, system)
|
||||
|
||||
dice.step.dice.nmol = [1, 1]
|
||||
|
||||
last_xyz_file = io.StringIO()
|
||||
last_xyz_file.writelines([
|
||||
@@ -657,32 +370,12 @@ class TestDiceInterface(unittest.TestCase):
|
||||
secondary_molecule = Molecule('secondary_molecule')
|
||||
secondary_molecule.add_atom(example_atom)
|
||||
|
||||
dice = DiceInterface(
|
||||
{
|
||||
'ljname': 'test',
|
||||
'outname': 'test',
|
||||
'ncores': 1,
|
||||
'dens': 1.0,
|
||||
'nmol': [1],
|
||||
'nstep': [1, 1],
|
||||
}
|
||||
)
|
||||
dice.configure(
|
||||
StepDTO(
|
||||
ncores=1,
|
||||
nprocs=1,
|
||||
simulation_dir='test',
|
||||
altsteps=1,
|
||||
molecule=[
|
||||
main_molecule,
|
||||
secondary_molecule,
|
||||
],
|
||||
nmol=[
|
||||
len(main_molecule.atom),
|
||||
len(secondary_molecule.atom),
|
||||
],
|
||||
)
|
||||
)
|
||||
system = System()
|
||||
system.add_type(main_molecule)
|
||||
system.add_type(secondary_molecule)
|
||||
|
||||
dice = DiceInterface()
|
||||
dice.configure(self.config, system)
|
||||
|
||||
last_xyz_file = io.StringIO()
|
||||
last_xyz_file.writelines([
|
||||
@@ -695,33 +388,15 @@ class TestDiceInterface(unittest.TestCase):
|
||||
|
||||
density = dice._new_density(last_xyz_file)
|
||||
|
||||
self.assertEqual(density, 3.3472359000000003)
|
||||
self.assertEqual(density, 85.35451545000001)
|
||||
|
||||
@mock.patch('builtins.open', new_callable=mock.mock_open)
|
||||
@mock.patch('diceplayer.shared.interface.dice_interface.random')
|
||||
def test_make_nvt_ter(self, mock_random, mock_open):
|
||||
mock_random.random.return_value = 1
|
||||
|
||||
dice = DiceInterface(
|
||||
{
|
||||
'ljname': 'test',
|
||||
'outname': 'test',
|
||||
'ncores': 1,
|
||||
'dens': 1.0,
|
||||
'nmol': [1],
|
||||
'nstep': [1, 1],
|
||||
}
|
||||
)
|
||||
dice.configure(
|
||||
StepDTO(
|
||||
ncores=1,
|
||||
nprocs=1,
|
||||
simulation_dir='test',
|
||||
altsteps=1,
|
||||
molecule=[],
|
||||
nmol=[],
|
||||
)
|
||||
)
|
||||
dice = DiceInterface()
|
||||
dice.configure(self.config, System())
|
||||
|
||||
dice._make_nvt_ter(1, 'test')
|
||||
|
||||
@@ -730,7 +405,7 @@ class TestDiceInterface(unittest.TestCase):
|
||||
|
||||
lines = list(map(lambda x: x[0][0], calls))
|
||||
|
||||
expected_lines = ['title = Diceplayer run - NVT Thermalization\n', 'ncores = 1\n', 'ljname = test\n', 'outname = test\n', 'nmol = 1\n', 'dens = 1.0\n', 'temp = 300.0\n', 'init = yes\n', 'nstep = 1\n', 'vstep = 0\n', 'mstop = 1\n', 'accum = no\n', 'iprint = 1\n', 'isave = 0\n', 'irdf = 0\n', 'seed = 1000000\n', 'upbuf = 360']
|
||||
expected_lines = ['title = Diceplayer run - NVT Thermalization\n', 'ncores = 4\n', 'ljname = phb.ljc\n', 'outname = phb\n', 'nmol = 1 50\n', 'dens = 0.75\n', 'temp = 300.0\n', 'init = yes\n', 'nstep = 2000\n', 'vstep = 0\n', 'mstop = 1\n', 'accum = no\n', 'iprint = 1\n', 'isave = 0\n', 'irdf = 0\n', 'seed = 1000000\n', 'upbuf = 360']
|
||||
|
||||
self.assertEqual(lines, expected_lines)
|
||||
|
||||
@@ -739,26 +414,8 @@ class TestDiceInterface(unittest.TestCase):
|
||||
def test_make_nvt_eq(self, mock_random, mock_open):
|
||||
mock_random.random.return_value = 1
|
||||
|
||||
dice = DiceInterface(
|
||||
{
|
||||
'ljname': 'test',
|
||||
'outname': 'test',
|
||||
'ncores': 1,
|
||||
'dens': 1.0,
|
||||
'nmol': [1],
|
||||
'nstep': [1, 1],
|
||||
}
|
||||
)
|
||||
dice.configure(
|
||||
StepDTO(
|
||||
ncores=1,
|
||||
nprocs=1,
|
||||
simulation_dir='test',
|
||||
altsteps=1,
|
||||
molecule=[],
|
||||
nmol=[],
|
||||
)
|
||||
)
|
||||
dice = DiceInterface()
|
||||
dice.configure(self.config, System())
|
||||
|
||||
dice._make_nvt_eq('test')
|
||||
|
||||
@@ -767,7 +424,7 @@ class TestDiceInterface(unittest.TestCase):
|
||||
|
||||
lines = list(map(lambda x: x[0][0], calls))
|
||||
|
||||
expected_lines = ['title = Diceplayer run - NVT Production\n', 'ncores = 1\n', 'ljname = test\n', 'outname = test\n', 'nmol = 1\n', 'dens = 1.0\n', 'temp = 300.0\n', 'init = no\n', 'nstep = 1\n', 'vstep = 0\n', 'mstop = 1\n', 'accum = no\n', 'iprint = 1\n', 'isave = 1000\n', 'irdf = 10\n', 'seed = 1000000\n']
|
||||
expected_lines = ['title = Diceplayer run - NVT Production\n', 'ncores = 4\n', 'ljname = phb.ljc\n', 'outname = phb\n', 'nmol = 1 50\n', 'dens = 0.75\n', 'temp = 300.0\n', 'init = no\n', 'nstep = 3000\n', 'vstep = 0\n', 'mstop = 1\n', 'accum = no\n', 'iprint = 1\n', 'isave = 1000\n', 'irdf = 40\n', 'seed = 1000000\n']
|
||||
|
||||
self.assertEqual(lines, expected_lines)
|
||||
|
||||
@@ -776,26 +433,8 @@ class TestDiceInterface(unittest.TestCase):
|
||||
def test_make_npt_ter(self, mock_random, mock_open):
|
||||
mock_random.random.return_value = 1
|
||||
|
||||
dice = DiceInterface(
|
||||
{
|
||||
'ljname': 'test',
|
||||
'outname': 'test',
|
||||
'ncores': 1,
|
||||
'dens': 1.0,
|
||||
'nmol': [1],
|
||||
'nstep': [1, 1, 1],
|
||||
}
|
||||
)
|
||||
dice.configure(
|
||||
StepDTO(
|
||||
ncores=1,
|
||||
nprocs=1,
|
||||
simulation_dir='test',
|
||||
altsteps=1,
|
||||
molecule=[],
|
||||
nmol=[],
|
||||
)
|
||||
)
|
||||
dice = DiceInterface()
|
||||
dice.configure(self.config, System())
|
||||
|
||||
dice._make_npt_ter(1, 'test')
|
||||
|
||||
@@ -804,7 +443,7 @@ class TestDiceInterface(unittest.TestCase):
|
||||
|
||||
lines = list(map(lambda x: x[0][0], calls))
|
||||
|
||||
expected_lines = ['title = Diceplayer run - NPT Thermalization\n', 'ncores = 1\n', 'ljname = test\n', 'outname = test\n', 'nmol = 1\n', 'press = 1.0\n', 'temp = 300.0\n', 'init = no\n', 'vstep = 0\n', 'nstep = 5\n', 'mstop = 1\n', 'accum = no\n', 'iprint = 1\n', 'isave = 0\n', 'irdf = 0\n', 'seed = 1000000\n']
|
||||
expected_lines = ['title = Diceplayer run - NPT Thermalization\n', 'ncores = 4\n', 'ljname = phb.ljc\n', 'outname = phb\n', 'nmol = 1 50\n', 'press = 1.0\n', 'temp = 300.0\n', 'init = no\n', 'vstep = 600\n', 'nstep = 5\n', 'mstop = 1\n', 'accum = no\n', 'iprint = 1\n', 'isave = 0\n', 'irdf = 0\n', 'seed = 1000000\n']
|
||||
|
||||
self.assertEqual(lines, expected_lines)
|
||||
|
||||
@@ -813,26 +452,8 @@ class TestDiceInterface(unittest.TestCase):
|
||||
def test_make_npt_eq(self, mock_random, mock_open):
|
||||
mock_random.random.return_value = 1
|
||||
|
||||
dice = DiceInterface(
|
||||
{
|
||||
'ljname': 'test',
|
||||
'outname': 'test',
|
||||
'ncores': 1,
|
||||
'dens': 1.0,
|
||||
'nmol': [1],
|
||||
'nstep': [1, 1, 1],
|
||||
}
|
||||
)
|
||||
dice.configure(
|
||||
StepDTO(
|
||||
ncores=1,
|
||||
nprocs=1,
|
||||
simulation_dir='test',
|
||||
altsteps=1,
|
||||
molecule=[],
|
||||
nmol=[],
|
||||
)
|
||||
)
|
||||
dice = DiceInterface()
|
||||
dice.configure(self.config, System())
|
||||
|
||||
dice._make_npt_eq('test')
|
||||
|
||||
@@ -841,7 +462,7 @@ class TestDiceInterface(unittest.TestCase):
|
||||
|
||||
lines = list(map(lambda x: x[0][0], calls))
|
||||
|
||||
expected_lines = ['title = Diceplayer run - NPT Production\n', 'ncores = 1\n', 'ljname = test\n', 'outname = test\n', 'nmol = 1\n', 'press = 1.0\n', 'temp = 300.0\n', 'nstep = 5\n', 'vstep = 0\n', 'init = no\n', 'mstop = 1\n', 'accum = no\n', 'iprint = 1\n', 'isave = 1000\n', 'irdf = 10\n', 'seed = 1000000\n']
|
||||
expected_lines = ['title = Diceplayer run - NPT Production\n', 'ncores = 4\n', 'ljname = phb.ljc\n', 'outname = phb\n', 'nmol = 1 50\n', 'press = 1.0\n', 'temp = 300.0\n', 'nstep = 5\n', 'vstep = 800\n', 'init = no\n', 'mstop = 1\n', 'accum = no\n', 'iprint = 1\n', 'isave = 1000\n', 'irdf = 40\n', 'seed = 1000000\n']
|
||||
|
||||
self.assertEqual(lines, expected_lines)
|
||||
|
||||
@@ -864,32 +485,12 @@ class TestDiceInterface(unittest.TestCase):
|
||||
secondary_molecule = Molecule('secondary_molecule')
|
||||
secondary_molecule.add_atom(example_atom)
|
||||
|
||||
dice = DiceInterface(
|
||||
{
|
||||
'ljname': 'test',
|
||||
'outname': 'test',
|
||||
'ncores': 1,
|
||||
'dens': 1.0,
|
||||
'nmol': [1],
|
||||
'nstep': [1, 1],
|
||||
}
|
||||
)
|
||||
dice.configure(
|
||||
StepDTO(
|
||||
ncores=1,
|
||||
nprocs=1,
|
||||
simulation_dir='test',
|
||||
altsteps=1,
|
||||
molecule=[
|
||||
main_molecule,
|
||||
secondary_molecule,
|
||||
],
|
||||
nmol=[
|
||||
len(main_molecule.atom),
|
||||
len(secondary_molecule.atom),
|
||||
],
|
||||
)
|
||||
)
|
||||
system = System()
|
||||
system.add_type(main_molecule)
|
||||
system.add_type(secondary_molecule)
|
||||
|
||||
dice = DiceInterface()
|
||||
dice.configure(self.config, system)
|
||||
|
||||
dice._make_potentials('test')
|
||||
|
||||
@@ -906,16 +507,8 @@ class TestDiceInterface(unittest.TestCase):
|
||||
@mock.patch('builtins.open', new_callable=mock.mock_open, read_data='End of simulation\nBLABLA')
|
||||
def test_run_dice_file(self, mock_open, mock_subprocess):
|
||||
mock_subprocess.call.return_value = 0
|
||||
dice = DiceInterface(
|
||||
{
|
||||
'ljname': 'test',
|
||||
'outname': 'test',
|
||||
'ncores': 1,
|
||||
'dens': 1.0,
|
||||
'nmol': [1],
|
||||
'nstep': [1, 1],
|
||||
}
|
||||
)
|
||||
dice = DiceInterface()
|
||||
dice.configure(self.config, System())
|
||||
|
||||
dice.run_dice_file(1, 1, 'test')
|
||||
|
||||
@@ -926,16 +519,8 @@ class TestDiceInterface(unittest.TestCase):
|
||||
@mock.patch('builtins.open', new_callable=mock.mock_open, read_data='Error\nBLABLA')
|
||||
def test_run_dice_file_raises_runtime_error_on_dice_file(self, mock_open, mock_subprocess):
|
||||
mock_subprocess.call.return_value = 0
|
||||
dice = DiceInterface(
|
||||
{
|
||||
'ljname': 'test',
|
||||
'outname': 'test',
|
||||
'ncores': 1,
|
||||
'dens': 1.0,
|
||||
'nmol': [1],
|
||||
'nstep': [1, 1],
|
||||
}
|
||||
)
|
||||
dice = DiceInterface()
|
||||
dice.configure(self.config, System())
|
||||
|
||||
with self.assertRaises(RuntimeError):
|
||||
dice.run_dice_file(1, 1, 'test')
|
||||
@@ -944,16 +529,8 @@ class TestDiceInterface(unittest.TestCase):
|
||||
@mock.patch('builtins.open', new_callable=mock.mock_open, read_data='End of simulation\nBLABLA')
|
||||
def test_run_dice_file_raises_runtime_error_of_dice_exit_code(self, mock_open, mock_subprocess):
|
||||
mock_subprocess.call.return_value = 1
|
||||
dice = DiceInterface(
|
||||
{
|
||||
'ljname': 'test',
|
||||
'outname': 'test',
|
||||
'ncores': 1,
|
||||
'dens': 1.0,
|
||||
'nmol': [1],
|
||||
'nstep': [1, 1],
|
||||
}
|
||||
)
|
||||
dice = DiceInterface()
|
||||
dice.configure(self.config, System())
|
||||
|
||||
with self.assertRaises(RuntimeError):
|
||||
dice.run_dice_file(1, 1, 'test')
|
||||
|
||||
113
tests/shared/interface/test_gaussian_interface.py
Normal file
113
tests/shared/interface/test_gaussian_interface.py
Normal file
@@ -0,0 +1,113 @@
|
||||
from diceplayer.shared.interface.gaussian_interface import GaussianInterface
|
||||
from diceplayer.shared.config.player_config import PlayerConfig
|
||||
from diceplayer.shared.environment.system import System
|
||||
from diceplayer import logger
|
||||
|
||||
from tests.mocks.mock_inputs import get_config_example
|
||||
|
||||
import yaml
|
||||
import io
|
||||
|
||||
|
||||
from unittest import mock
|
||||
import unittest
|
||||
|
||||
|
||||
class TestGaussianInterface(unittest.TestCase):
|
||||
def setUp(self) -> None:
|
||||
logger.set_logger(stream=io.StringIO())
|
||||
|
||||
config = yaml.load(get_config_example(), Loader=yaml.Loader)
|
||||
self.config = PlayerConfig.from_dict(config['diceplayer'])
|
||||
|
||||
def test_class_instantiation(self):
|
||||
gaussian_interface = GaussianInterface()
|
||||
self.assertIsInstance(gaussian_interface, GaussianInterface)
|
||||
|
||||
def test_configure(self):
|
||||
gaussian_interface = GaussianInterface()
|
||||
|
||||
self.assertIsNone(gaussian_interface.step)
|
||||
self.assertIsNone(gaussian_interface.system)
|
||||
|
||||
gaussian_interface.configure(self.config, System())
|
||||
|
||||
self.assertIsNotNone(gaussian_interface.step)
|
||||
self.assertIsNotNone(gaussian_interface.system)
|
||||
|
||||
def test_reset(self):
|
||||
gaussian_interface = GaussianInterface()
|
||||
|
||||
gaussian_interface.configure(self.config, System())
|
||||
|
||||
self.assertIsNotNone(gaussian_interface.step)
|
||||
self.assertIsNotNone(gaussian_interface.system)
|
||||
|
||||
gaussian_interface.reset()
|
||||
|
||||
self.assertFalse(hasattr(gaussian_interface, 'step'))
|
||||
self.assertFalse(hasattr(gaussian_interface, 'system'))
|
||||
|
||||
@mock.patch('diceplayer.shared.interface.gaussian_interface.Path.mkdir')
|
||||
@mock.patch('diceplayer.shared.interface.gaussian_interface.Path.exists')
|
||||
def test_make_qm_dir(self, mock_exists, mock_mkdir):
|
||||
mock_exists.return_value = False
|
||||
|
||||
gaussian_interface = GaussianInterface()
|
||||
gaussian_interface.configure(self.config, System())
|
||||
|
||||
gaussian_interface._make_qm_dir(1)
|
||||
|
||||
mock_exists.assert_called_once()
|
||||
mock_mkdir.assert_called_once()
|
||||
|
||||
@mock.patch('diceplayer.shared.interface.gaussian_interface.shutil.copy')
|
||||
@mock.patch('diceplayer.shared.interface.gaussian_interface.Path.exists')
|
||||
def test_copy_chk_file_from_previous_step(self, mock_exists, mock_copy):
|
||||
gaussian_interface = GaussianInterface()
|
||||
gaussian_interface.configure(self.config, System())
|
||||
|
||||
mock_exists.side_effect = [False, True]
|
||||
|
||||
gaussian_interface._copy_chk_file_from_previous_step(2)
|
||||
|
||||
self.assertTrue(mock_exists.called)
|
||||
self.assertTrue(mock_copy.called)
|
||||
|
||||
@mock.patch('diceplayer.shared.interface.gaussian_interface.shutil.copy')
|
||||
@mock.patch('diceplayer.shared.interface.gaussian_interface.Path.exists')
|
||||
def test_copy_chk_file_from_previous_step_no_previous_step(self, mock_exists, mock_copy):
|
||||
gaussian_interface = GaussianInterface()
|
||||
gaussian_interface.configure(self.config, System())
|
||||
|
||||
mock_exists.side_effect = [False, False]
|
||||
|
||||
with self.assertRaises(FileNotFoundError):
|
||||
gaussian_interface._copy_chk_file_from_previous_step(2)
|
||||
|
||||
@mock.patch('diceplayer.shared.interface.gaussian_interface.shutil.copy')
|
||||
@mock.patch('diceplayer.shared.interface.gaussian_interface.Path.exists')
|
||||
def test_copy_chk_file_from_previous_step_current_exists(self, mock_exists, mock_copy):
|
||||
gaussian_interface = GaussianInterface()
|
||||
gaussian_interface.configure(self.config, System())
|
||||
|
||||
mock_exists.side_effect = [True, True]
|
||||
|
||||
with self.assertRaises(FileExistsError):
|
||||
gaussian_interface._copy_chk_file_from_previous_step(2)
|
||||
|
||||
# def test_start(self):
|
||||
# gaussian_interface = GaussianInterface()
|
||||
# gaussian_interface.configure(self.config, System())
|
||||
#
|
||||
# gaussian_interface._make_qm_dir = mock.Mock()
|
||||
# gaussian_interface._copy_chk_file_from_previous_step = mock.Mock()
|
||||
#
|
||||
# gaussian_interface.start(2)
|
||||
#
|
||||
# gaussian_interface._make_qm_dir.assert_called_once_with(2)
|
||||
# gaussian_interface._copy_chk_file_from_previous_step.assert_called_once_with(2)
|
||||
|
||||
|
||||
if __name__ == '__main__':
|
||||
unittest.main()
|
||||
@@ -3,119 +3,12 @@ from diceplayer import logger
|
||||
|
||||
import io
|
||||
|
||||
from tests.mocks.mock_inputs import mock_open
|
||||
|
||||
from unittest import mock
|
||||
import unittest
|
||||
|
||||
|
||||
def get_config_example():
|
||||
return """
|
||||
diceplayer:
|
||||
maxcyc: 3
|
||||
opt: no
|
||||
ncores: 4
|
||||
nprocs: 4
|
||||
qmprog: 'g16'
|
||||
lps: no
|
||||
ghosts: no
|
||||
altsteps: 20000
|
||||
|
||||
dice:
|
||||
nmol: [1, 50]
|
||||
dens: 0.75
|
||||
nstep: [2000, 3000, 4000]
|
||||
isave: 1000
|
||||
outname: 'phb'
|
||||
progname: '~/.local/bin/dice'
|
||||
ljname: 'phb.ljc'
|
||||
randominit: 'first'
|
||||
|
||||
gaussian:
|
||||
qmprog: 'g16'
|
||||
level: 'MP2/aug-cc-pVDZ'
|
||||
keywords: 'freq'
|
||||
"""
|
||||
|
||||
|
||||
def get_potentials_exemple():
|
||||
return """\
|
||||
*
|
||||
2
|
||||
1 TEST
|
||||
1 1 0.000000 0.000000 0.000000 0.000000 0.0000 0.0000
|
||||
1 PLACEHOLDER
|
||||
1 1 0.000000 0.000000 0.000000 0.000000 0.0000 0.0000
|
||||
"""
|
||||
|
||||
|
||||
def get_potentials_error_combrule():
|
||||
return """\
|
||||
.
|
||||
2
|
||||
1 TEST
|
||||
1 1 0.000000 0.000000 0.000000 0.000000 0.0000 0.0000
|
||||
1 PLACEHOLDER
|
||||
1 1 0.000000 0.000000 0.000000 0.000000 0.0000 0.0000
|
||||
"""
|
||||
|
||||
|
||||
def get_potentials_error_ntypes():
|
||||
return """\
|
||||
*
|
||||
a
|
||||
1 TEST
|
||||
1 1 0.000000 0.000000 0.000000 0.000000 0.0000 0.0000
|
||||
1 PLACEHOLDER
|
||||
1 1 0.000000 0.000000 0.000000 0.000000 0.0000 0.0000
|
||||
"""
|
||||
|
||||
|
||||
def get_potentials_error_ntypes_config():
|
||||
return """\
|
||||
*
|
||||
3
|
||||
1 TEST
|
||||
1 1 0.000000 0.000000 0.000000 0.000000 0.0000 0.0000
|
||||
1 PLACEHOLDER
|
||||
1 1 0.000000 0.000000 0.000000 0.000000 0.0000 0.0000
|
||||
"""
|
||||
|
||||
|
||||
def get_potentials_error_nsites():
|
||||
return """\
|
||||
*
|
||||
2
|
||||
. TEST
|
||||
1 1 0.000000 0.000000 0.000000 0.000000 0.0000 0.0000
|
||||
1 PLACEHOLDER
|
||||
1 1 0.000000 0.000000 0.000000 0.000000 0.0000 0.0000
|
||||
"""
|
||||
|
||||
|
||||
def get_potentials_error_molname():
|
||||
return """\
|
||||
*
|
||||
2
|
||||
1
|
||||
1 1 0.000000 0.000000 0.000000 0.000000 0.0000 0.0000
|
||||
1 PLACEHOLDER
|
||||
1 1 0.000000 0.000000 0.000000 0.000000 0.0000 0.0000
|
||||
"""
|
||||
|
||||
|
||||
def mock_open(file, *args, **kwargs):
|
||||
values = {
|
||||
"control.test.yml": get_config_example(),
|
||||
"phb.ljc": get_potentials_exemple(),
|
||||
"phb.error.combrule.ljc": get_potentials_error_combrule(),
|
||||
"phb.error.ntypes.ljc": get_potentials_error_ntypes(),
|
||||
"phb.error.ntypes.config.ljc": get_potentials_error_ntypes_config(),
|
||||
"phb.error.nsites.ljc": get_potentials_error_nsites(),
|
||||
"phb.error.molname.ljc": get_potentials_error_molname(),
|
||||
}
|
||||
mock_file = mock.mock_open(read_data=values[file])
|
||||
return mock_file()
|
||||
|
||||
|
||||
class TestPlayer(unittest.TestCase):
|
||||
def setUp(self):
|
||||
logger.set_logger(stream=io.StringIO())
|
||||
@@ -131,19 +24,13 @@ class TestPlayer(unittest.TestCase):
|
||||
def test_start(self):
|
||||
player = Player("control.test.yml")
|
||||
|
||||
player.print_keywords = mock.MagicMock()
|
||||
player.create_simulation_dir = mock.MagicMock()
|
||||
player.read_potentials = mock.MagicMock()
|
||||
player.print_potentials = mock.MagicMock()
|
||||
player.gaussian_start = mock.MagicMock()
|
||||
player.dice_start = mock.MagicMock()
|
||||
|
||||
player.start(1)
|
||||
|
||||
self.assertTrue(player.print_keywords.called)
|
||||
self.assertTrue(player.create_simulation_dir.called)
|
||||
self.assertTrue(player.read_potentials.called)
|
||||
self.assertTrue(player.print_potentials.called)
|
||||
self.assertEqual(player.dice_start.call_count, 3)
|
||||
self.assertEqual(player.gaussian_start.call_count, 3)
|
||||
|
||||
@mock.patch("builtins.open", mock_open)
|
||||
@mock.patch("diceplayer.player.Path")
|
||||
@@ -178,7 +65,22 @@ class TestPlayer(unittest.TestCase):
|
||||
with self.assertLogs() as cm:
|
||||
player.print_keywords()
|
||||
|
||||
expected_output = ['INFO:diceplayer:##########################################################################################\n############# Welcome to DICEPLAYER version 1.0 #############\n##########################################################################################\n\n', 'INFO:diceplayer:Your python version is TEST\n', 'INFO:diceplayer:\n', 'INFO:diceplayer:Program started on 00 Test 0000 at 00:00:00\n', 'INFO:diceplayer:\n', 'INFO:diceplayer:Environment variables:\n', 'INFO:diceplayer:OMP_STACKSIZE = Not set\n', 'INFO:diceplayer:\n==========================================================================================\n CONTROL variables being used in this run:\n------------------------------------------------------------------------------------------\n\n', 'INFO:diceplayer:\n', 'INFO:diceplayer:------------------------------------------------------------------------------------------\n DICE variables being used in this run:\n------------------------------------------------------------------------------------------\n\n', 'INFO:diceplayer:dens = 0.75', 'INFO:diceplayer:isave = 1000', 'INFO:diceplayer:ljname = phb.ljc', 'INFO:diceplayer:nmol = [ 1 50 ]', 'INFO:diceplayer:nstep = [ 2000 3000 4000 ]', 'INFO:diceplayer:outname = phb', 'INFO:diceplayer:press = 1.0', 'INFO:diceplayer:progname = ~/.local/bin/dice', 'INFO:diceplayer:randominit = first', 'INFO:diceplayer:temp = 300.0', 'INFO:diceplayer:\n', 'INFO:diceplayer:------------------------------------------------------------------------------------------\n GAUSSIAN variables being used in this run:\n------------------------------------------------------------------------------------------\n\n', 'INFO:diceplayer:keywords = freq', 'INFO:diceplayer:level = MP2/aug-cc-pVDZ', 'INFO:diceplayer:pop = chelpg', 'INFO:diceplayer:qmprog = g16', 'INFO:diceplayer:\n']
|
||||
expected_output = [
|
||||
'INFO:diceplayer:##########################################################################################\n############# Welcome to DICEPLAYER version 1.0 #############\n##########################################################################################\n\n',
|
||||
'INFO:diceplayer:Your python version is TEST\n', 'INFO:diceplayer:\n',
|
||||
'INFO:diceplayer:Program started on 00 Test 0000 at 00:00:00\n', 'INFO:diceplayer:\n',
|
||||
'INFO:diceplayer:Environment variables:\n', 'INFO:diceplayer:OMP_STACKSIZE = Not set\n',
|
||||
'INFO:diceplayer:\n==========================================================================================\n CONTROL variables being used in this run:\n------------------------------------------------------------------------------------------\n\n',
|
||||
'INFO:diceplayer:\n',
|
||||
'INFO:diceplayer:------------------------------------------------------------------------------------------\n DICE variables being used in this run:\n------------------------------------------------------------------------------------------\n\n',
|
||||
'INFO:diceplayer:dens = 0.75', 'INFO:diceplayer:isave = 1000', 'INFO:diceplayer:ljname = phb.ljc',
|
||||
'INFO:diceplayer:nmol = [ 1 50 ]', 'INFO:diceplayer:nstep = [ 2000 3000 4000 ]',
|
||||
'INFO:diceplayer:outname = phb', 'INFO:diceplayer:press = 1.0',
|
||||
'INFO:diceplayer:progname = ~/.local/bin/dice', 'INFO:diceplayer:randominit = first',
|
||||
'INFO:diceplayer:temp = 300.0', 'INFO:diceplayer:\n',
|
||||
'INFO:diceplayer:------------------------------------------------------------------------------------------\n GAUSSIAN variables being used in this run:\n------------------------------------------------------------------------------------------\n\n',
|
||||
'INFO:diceplayer:keywords = freq', 'INFO:diceplayer:level = MP2/aug-cc-pVDZ',
|
||||
'INFO:diceplayer:pop = chelpg', 'INFO:diceplayer:qmprog = g16', 'INFO:diceplayer:\n']
|
||||
|
||||
self.assertEqual(cm.output, expected_output)
|
||||
|
||||
@@ -333,7 +235,7 @@ class TestPlayer(unittest.TestCase):
|
||||
|
||||
# Testing combrule error
|
||||
with self.assertRaises(SystemExit) as context:
|
||||
player.dice.config.ljname = "phb.error.combrule.ljc"
|
||||
player.config.dice.ljname = "phb.error.combrule.ljc"
|
||||
player.read_potentials()
|
||||
|
||||
self.assertEqual(
|
||||
@@ -343,7 +245,7 @@ class TestPlayer(unittest.TestCase):
|
||||
|
||||
# Testing ntypes error
|
||||
with self.assertRaises(SystemExit) as context:
|
||||
player.dice.config.ljname = "phb.error.ntypes.ljc"
|
||||
player.config.dice.ljname = "phb.error.ntypes.ljc"
|
||||
player.read_potentials()
|
||||
|
||||
self.assertEqual(
|
||||
@@ -353,7 +255,7 @@ class TestPlayer(unittest.TestCase):
|
||||
|
||||
# Testing ntypes error on config
|
||||
with self.assertRaises(SystemExit) as context:
|
||||
player.dice.config.ljname = "phb.error.ntypes.config.ljc"
|
||||
player.config.dice.ljname = "phb.error.ntypes.config.ljc"
|
||||
player.read_potentials()
|
||||
|
||||
self.assertEqual(
|
||||
@@ -364,7 +266,7 @@ class TestPlayer(unittest.TestCase):
|
||||
|
||||
# Testing nsite error
|
||||
with self.assertRaises(ValueError) as context:
|
||||
player.dice.config.ljname = "phb.error.nsites.ljc"
|
||||
player.config.dice.ljname = "phb.error.nsites.ljc"
|
||||
player.read_potentials()
|
||||
|
||||
self.assertEqual(
|
||||
@@ -374,7 +276,7 @@ class TestPlayer(unittest.TestCase):
|
||||
|
||||
# Testing molname error
|
||||
with self.assertRaises(ValueError) as context:
|
||||
player.dice.config.ljname = "phb.error.molname.ljc"
|
||||
player.config.dice.ljname = "phb.error.molname.ljc"
|
||||
player.read_potentials()
|
||||
|
||||
self.assertEqual(
|
||||
@@ -391,7 +293,23 @@ class TestPlayer(unittest.TestCase):
|
||||
with self.assertLogs(level='INFO') as context:
|
||||
player.print_potentials()
|
||||
|
||||
expected_output = ['INFO:diceplayer:==========================================================================================\n', 'INFO:diceplayer: Potential parameters from file phb.ljc:', 'INFO:diceplayer:------------------------------------------------------------------------------------------\n', 'INFO:diceplayer:Combination rule: *', 'INFO:diceplayer:Types of molecules: 2\n', 'INFO:diceplayer:1 atoms in molecule type 1:', 'INFO:diceplayer:---------------------------------------------------------------------------------', 'INFO:diceplayer:Lbl AN X Y Z Charge Epsilon Sigma Mass', 'INFO:diceplayer:---------------------------------------------------------------------------------', 'INFO:diceplayer:1 1 0.00000 0.00000 0.00000 0.000000 0.00000 0.0000 1.0079', 'INFO:diceplayer:\n', 'INFO:diceplayer:1 atoms in molecule type 2:', 'INFO:diceplayer:---------------------------------------------------------------------------------', 'INFO:diceplayer:Lbl AN X Y Z Charge Epsilon Sigma Mass', 'INFO:diceplayer:---------------------------------------------------------------------------------', 'INFO:diceplayer:1 1 0.00000 0.00000 0.00000 0.000000 0.00000 0.0000 1.0079', 'INFO:diceplayer:\n', 'INFO:diceplayer:==========================================================================================']
|
||||
expected_output = [
|
||||
'INFO:diceplayer:==========================================================================================\n',
|
||||
'INFO:diceplayer: Potential parameters from file phb.ljc:',
|
||||
'INFO:diceplayer:------------------------------------------------------------------------------------------\n',
|
||||
'INFO:diceplayer:Combination rule: *', 'INFO:diceplayer:Types of molecules: 2\n',
|
||||
'INFO:diceplayer:1 atoms in molecule type 1:',
|
||||
'INFO:diceplayer:---------------------------------------------------------------------------------',
|
||||
'INFO:diceplayer:Lbl AN X Y Z Charge Epsilon Sigma Mass',
|
||||
'INFO:diceplayer:---------------------------------------------------------------------------------',
|
||||
'INFO:diceplayer:1 1 0.00000 0.00000 0.00000 0.000000 0.00000 0.0000 1.0079',
|
||||
'INFO:diceplayer:\n', 'INFO:diceplayer:1 atoms in molecule type 2:',
|
||||
'INFO:diceplayer:---------------------------------------------------------------------------------',
|
||||
'INFO:diceplayer:Lbl AN X Y Z Charge Epsilon Sigma Mass',
|
||||
'INFO:diceplayer:---------------------------------------------------------------------------------',
|
||||
'INFO:diceplayer:1 1 0.00000 0.00000 0.00000 0.000000 0.00000 0.0000 1.0079',
|
||||
'INFO:diceplayer:\n',
|
||||
'INFO:diceplayer:==========================================================================================']
|
||||
|
||||
self.assertEqual(
|
||||
context.output,
|
||||
@@ -401,23 +319,22 @@ class TestPlayer(unittest.TestCase):
|
||||
@mock.patch("builtins.open", mock_open)
|
||||
def test_dice_start(self):
|
||||
player = Player("control.test.yml")
|
||||
player.dice = mock.MagicMock()
|
||||
player.dice.start = mock.MagicMock()
|
||||
player.dice_interface = mock.MagicMock()
|
||||
player.dice_interface.start = mock.MagicMock()
|
||||
|
||||
player.dice_start(1)
|
||||
|
||||
player.dice.start.assert_called_once()
|
||||
|
||||
@mock.patch("builtins.open", mock_open)
|
||||
def test_gaussian_start(self):
|
||||
player = Player("control.test.yml")
|
||||
player.gaussian = mock.MagicMock()
|
||||
player.gaussian.start = mock.MagicMock()
|
||||
|
||||
player.gaussian_start(1)
|
||||
|
||||
player.gaussian.start.assert_called_once()
|
||||
player.dice_interface.start.assert_called_once()
|
||||
|
||||
# @mock.patch("builtins.open", mock_open)
|
||||
# def test_gaussian_start(self):
|
||||
# player = Player("control.test.yml")
|
||||
# player.gaussian_interface = mock.MagicMock()
|
||||
# player.gaussian_interface.start = mock.MagicMock()
|
||||
#
|
||||
# player.gaussian_start(1)
|
||||
#
|
||||
# player.gaussian_interface.start.assert_called_once()
|
||||
|
||||
|
||||
if __name__ == '__main__':
|
||||
|
||||
Reference in New Issue
Block a user