Commit Graph

39 Commits

Author SHA1 Message Date
9202331852 Finishes DiceInterface Refactoring and Continues Tests Implementation 2023-04-24 12:16:00 -03:00
b869ee74fb Implements More Tests and Begins Dice Refactor Implementation 2023-04-22 11:29:08 -03:00
71744641ff Read Potentials and Initial Testing 2023-03-04 16:20:25 -03:00
7a87204181 Updated Dependencies 2022-11-08 12:12:05 -03:00
bd4b911667 Merge branch 'devel' into main 2022-08-12 10:15:43 -03:00
6fcdb0919f Relaxation of Molecular Charges - v0.0.1 2022-08-12 10:13:35 -03:00
ab996196d4 Updated Dependencies on Pipenv 2022-06-04 19:10:08 -03:00
78e51dc9b5 Rename phb.ljc.exemple to phb.ljc.example 2022-06-02 13:48:29 -03:00
3acf99e9c1 Rename control.yml.exemple to control.yml.example 2022-06-02 13:48:17 -03:00
16808ae2f8 Merge branch 'devel' into main 2022-06-02 13:42:56 -03:00
bd35d5057a Adding stable dependencies to project 2022-06-02 13:42:37 -03:00
9c8359c365 Better setup file was implemented 2022-06-02 01:34:34 -03:00
e253c4fe3e Merge branch 'devel' into main 2022-06-01 20:07:01 -03:00
e54b3e55fa Fixes Player Class Implementation 2022-06-01 20:06:00 -03:00
44cb4268ef Implements the Use of a Simple DTO for Communication Between Classes 2022-05-31 09:55:19 -03:00
0d78c83e91 Merge branch 'devel-folder-rework' into devel 2022-05-31 09:14:32 -03:00
4ae8385918 Initial Folder Rework Implementation
Adds the Environment, External, Utils folder inside de DPpack. All classes are going to be implemented there
2022-05-31 09:13:08 -03:00
f4e892cf34 Creation of Binary with PyInstaller and Removal of Cx_Freeze 2022-02-24 03:22:20 +00:00
8cf9188c6d Creation of Binary with cx_Freeze 2022-02-21 13:55:21 +00:00
5efe49607d Separated Completely Dice in Dice.py and Fixed Continue Feature in Dice
This commit separates the Dice class in a Dice.py file stored in DPacks/external, also fixes the continue feature in the Dice class.

Signed-off-by: Vitor Hideyoshi <vitor.h.n.batista@gmail.com>
2022-02-21 04:59:00 +00:00
Vitor Hideyoshi Nakazone Batista
4d122a43aa Merge pull request #1 from HideyoshiNakazone/devel
Translation of Gaussian Processes and Step Calculations Fixes
2022-01-08 13:22:59 -03:00
926ffc5c6b Translation of Gaussian Processes and Step Calculations Fixes
This commit temporarily uses Gaussian Heassian for step calculations, fixes fchk file reading, fixes step calculation, fixes log file and geoms formation. Also this commit adds type hinting to improve and facilitate the program development.
2021-12-08 21:16:06 -03:00
2a4e9eff0c Initial Translation of Gaussian Processes and Packaging of DicePlayer python module
This commit adds the methods that were present in the Gaussian.py file into the SetGlobals.py file and packages the program into a diceplayer module so it can be ran using 'python3 -m diceplayer'

Signed-off-by: Vitor Hideyoshi <vitor.h.n.batista@gmail.com>
2021-12-06 21:20:35 -03:00
49d509029f Dice Processes
This commit creates and fixes the Dice process: NVT.ter, NPT.ter, NPT.eq

Signed-off-by: Vitor Hideyoshi <vitor.h.n.batista@gmail.com>
2021-12-06 21:20:35 -03:00
0d877e3dce Dice Player Translation, Initial work on Dice Processes
This commit adds the functions responsible for creating Dice inputs and calling dice it self, the original functions were removed from the Dice.py file and added to SetGlobals' Internal and Dice classes

Signed-off-by: Vitor Hideyoshi <vitor.h.n.batista@gmail.com>
2021-12-06 21:20:35 -03:00
f5e4c7ba1f DicePlayer Translation
check_executables was disabled for testing and now it'll be enabled again for new testing

Signed-off-by: Vitor Hideyoshi <vitor.h.n.batista@gmail.com>
2021-12-06 21:20:34 -03:00
6017f272b3 SetGlobas/MolHandling(fixes)/DicePlayer Translation
Fixed Numerus functions in the SetGlobals file and MolHandling, translated DicePlayer and tested till, such as inertia_tensor, add_type, center_of_mass_to_origin. standard_orientation; and removed chglevel keyword

Signed-off-by: Vitor Hideyoshi <vitor.h.n.batista@gmail.com>
2021-12-06 21:20:34 -03:00
316acf4761 SetGlobas/MolHandling(fixes)/DicePlayer Translation
Fixed Numerus functions in the SetGlobals file and MolHandling, translated DicePlayer and tested till printing of initial geometry for cyc==1

Signed-off-by: Vitor Hideyoshi <vitor.h.n.batista@gmail.com>
2021-12-06 21:20:34 -03:00
2f9cecee34 SetGlobas Translation - Final (without ghosts and lp)
Internal methods fixes: check_executables

Signed-off-by: Vitor Hideyoshi <vitor.h.n.batista@gmail.com>
2021-12-06 21:20:34 -03:00
63d3d5f40d SetGlobas Translation - Final (without ghosts and lp)
Internal methods translations: read_potential, print_potential

Signed-off-by: Vitor Hideyoshi <vitor.h.n.batista@gmail.com>
2021-12-06 21:20:34 -03:00
d9da04419a SetGlobas Translation - Most
Internal methods translations: read_keywords, check_keywords, print_keywords, read_potential

Signed-off-by: Vitor Hideyoshi <vitor.h.n.batista@gmail.com>
2021-12-06 21:20:34 -03:00
99b8ee17da Initial Translation of SetGlobals - ReadKeywords Method
This method reads the keywords from a given initial file and saves it for future use, each in their separate class

Signed-off-by: Vitor Hideyoshi <vitor.h.n.batista@gmail.com>
2021-12-06 21:20:33 -03:00
a1ff35eba6 Initial Translation of SetGlobals
Initial work in the tradution of SetGlobals and Logistics in the use of classes for the management of processes and threaded works

Signed-off-by: Vitor Hideyoshi <vitor.h.n.batista@gmail.com>
2021-12-06 21:20:33 -03:00
ec08e05614 MolHandling Translation - Most
In this commit most of the work about Molecules and the Quantum Mechanical System has been finished, the only part still missing if a method that populates de ASSEC, but this method requires the Classes: Dice, Player and Gaussian

Signed-off-by: Vitor Hideyoshi <vitor.h.n.batista@gmail.com>
2021-12-06 21:20:33 -03:00
6768012cc0 MolHandling Translation
In this commit were created a System class to manage the functions between two atoms and various new functions were translated

Signed-off-by: Vitor Hideyoshi <vitor.h.n.batista@gmail.com>
2021-12-06 21:20:33 -03:00
292995d0ea Initial work in the Molecule and Atom class
Signed-off-by: Vitor Hideyoshi <vitor.h.n.batista@gmail.com>
2021-12-06 21:20:33 -03:00
7d74c3fb3e versioning fix
Signed-off-by: Vitor Hideyoshi <vitor.h.n.batista@gmail.com>
2021-12-06 21:20:33 -03:00
9dd4de0167 versioning fix
Signed-off-by: Vitor Hideyoshi <vitor.h.n.batista@gmail.com>
2021-12-06 21:20:32 -03:00
2899031b71 v0.0.1
Signed-off-by: Vitor Hideyoshi <vitor.h.n.batista@gmail.com>
2021-12-06 21:20:32 -03:00